"Table 14.2. List of significantly associated haplotypes based on the Endometriosis Disease results using the Quebec Founder Population (QFP). Individual haplotypes with associated relative risks are presented in each row of the table; these values were extracted from the associated marker haplotype window with the most significant p value for each SNP in Table 14.1. The first column lists the region ID as presented in Table 1. The Haplotype column lists the specific nucleotides for the individual SNP alleles contributing to the haplotype reported. The Case and Control columns correspond to the numbers of cases and controls, respectively, containing the haplotype variant noted in the Haplotype column. The Total Case and Total Control columns list the total numbers of cases and controls for which genotype data was available for the haplotype in question. The RR column gives to the relative risk for each  particular haplotype. The remainder of the columns lists the SeqIDs for the SNPs contributing to the haplotype and their relative location with respect to the central marker. 
The Central marker (0) column lists the SeqID for the central marker on which the haplotype is based.
 Flanking markers are identified by minus (-) or plus (+) signs to indicate the relative location of flanking SNPs. "							
							
Region	Haplotype	Case	Control	TotalCase	TotalControl	RR	Central Marker (0)
225	C		375	401	922		922		0.890	4657
225	A		547	521	922		922		1.120	4657
225	T		122	146	922		922		0.810	4660
225	C		800	776	922		922		1.230	4660
225	C		788	819	922		922		0.740	4664
225	T		134	103	922		922		1.350	4664
225	G		551	499	922		922		1.260	4666
225	A		371	423	922		922		0.790	4666
225	A		291	215	922		922		1.520	4667
225	G		631	707	922		922		0.660	4667
225	T		388	431	922		922		0.830	4668
225	G		534	491	922		922		1.210	4668
225	C		43	56	922		922		0.760	4669
225	T		879	866	922		922		1.320	4669
225	G		519	592	922		922		0.720	4670
225	T		403	330	922		922		1.390	4670
225	G		463	517	922		922		0.790	4671
225	A		459	405	922		922		1.270	4671
225	A		476	532	922		922		0.780	4672
225	C		446	390	922		922		1.280	4672
225	T		558	523	922		922		1.170	4674
225	C		364	399	922		922		0.860	4674
225	A		443	390	922		922		1.260	4675
225	G		479	532	922		922		0.790	4675
225	T		693	781	922		922		0.550	4676
225	G		229	141	922		922		1.830	4676
225	T		846	819	922		922		1.400	4677
225	G		76	103	922		922		0.710	4677
225	T		142	188	922		922		0.710	4678
225	C		780	734	922		922		1.410	4678
225	A		780	734	922		922		1.410	4679
225	G		142	188	922		922		0.710	4679
225	C		780	734	922		922		1.410	4680
225	T		142	188	922		922		0.710	4680
225	G		362	398	922		922		0.850	4681
225	A		560	524	922		922		1.170	4681
225	A		857	838	922		922		1.320	4682
225	G		65	84	922		922		0.760	4682
225	A		99	118	922		922		0.820	4683
225	G		823	804	922		922		1.220	4683
225	A		663	599	922		922		1.380	4684
225	G		259	323	922		922		0.720	4684
225	A		485	438	922		922		1.230	4685
225	G		437	484	922		922		0.820	4685
225	T		736	686	922		922		1.360	4686
225	G		186	236	922		922		0.730	4686
225	T		299	201	922		922		1.720	4687
225	C		623	721	922		922		0.580	4687
225	C		460	392	922		922		1.350	4688
225	T		462	530	922		922		0.740	4688
225	C		666	640	922		922		1.150	4689
225	A		256	282	922		922		0.870	4689
225	G		457	521	922		922		0.760	4690
225	A		465	401	922		922		1.320	4690
225	G		279	327	922		922		0.790	4693
225	A		643	595	922		922		1.270	4693
225	G		522	459	922		922		1.320	4694
225	A		400	463	922		922		0.760	4694
225	G		314	369	922		922		0.770	4695
225	A		608	553	922		922		1.290	4695
225	C		384	436	922		922		0.800	4696
225	T		538	486	922		922		1.260	4696
225	C		642	602	922		922		1.220	4697
225	T		280	320	922		922		0.820	4697
225	C		388	438	922		922		0.800	4698
225	T		534	484	922		922		1.250	4698
225	A		438	465	922		922		0.890	4699
225	G		484	457	922		922		1.120	4699
